Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PAAD rs57586626 chr2:70414485 T/C 0 177 15.33 17.4 1.03 KM Plot
PAAD rs57631300 chr1:216284131 G/C 0 175 14.63 17 0.4 KM Plot
PAAD rs57741166 chr17:40308707 T/C 8.84E-5 177 15.57 13.8 4 KM Plot
PAAD rs57913162 chr2:128506802 C/T 7.9E-10 178 15.62 12.6 2.2 KM Plot
PAAD rs57941479 chr17:12919874 G/C 4.8E-6 175 15.9 15.47 7.77 KM Plot
PAAD rs57942850 chr11:34771758 G/GA 8.7E-6 177 15.57 12.55 3.67 KM Plot
PAAD rs57960305 chr6:169799110 T/C 1.21E-6 175 15.55 13.52 3.43 KM Plot
PAAD rs57986825 chr2:128585810 A/G 1.01E-9 177 15.62 12.55 2.2 KM Plot
PAAD rs57993009 chr15:78307420 G/A 0 177 15.43 17.4 1.03 KM Plot
PAAD rs58076056 chr15:81567576 G/A 4.83E-5 176 15.57 15.72 1.37 KM Plot
PAAD rs58080260 chr2:128539256 A/G 7.9E-10 178 15.62 12.6 2.2 KM Plot
PAAD rs58282270 chr2:70462547 C/G 0 178 15.37 17.4 1.03 KM Plot
PAAD rs58419900 chr6:44942035 TATA/T 8.88E-5 178 16.07 16.17 11.98 KM Plot
PAAD rs58608011 chr17:12907909 C/T 3.49E-6 177 16.05 15.47 7.77 KM Plot
PAAD rs58631232 chr1:16242401 AT/A 2.1E-6 176 15.62 11.77 3.43 KM Plot